Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cldnd1Q9CQX5 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.17■□□□□ 0.98
Cldnd1Q9CQX5 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cldnd1Q9CQX5 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cldnd1Q9CQX5 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Cldnd1Q9CQX5 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
Cldnd1Q9CQX5 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.14■□□□□ 0.98
Cldnd1Q9CQX5 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cldnd1Q9CQX5 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.14■□□□□ 0.97
Cldnd1Q9CQX5 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cldnd1Q9CQX5 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cldnd1Q9CQX5 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldnd1Q9CQX5 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Cldnd1Q9CQX5 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Cldnd1Q9CQX5 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Gm11421-201ENSMUST00000122124 294 ntBASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cldnd1Q9CQX5 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Cldnd1Q9CQX5 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.08■□□□□ 0.97
Cldnd1Q9CQX5 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cldnd1Q9CQX5 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cldnd1Q9CQX5 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cldnd1Q9CQX5 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cldnd1Q9CQX5 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldnd1Q9CQX5 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cldnd1Q9CQX5 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cldnd1Q9CQX5 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cldnd1Q9CQX5 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 162.5 ms