Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Lig4Q8BTF7 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Lig4Q8BTF7 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Lig4Q8BTF7 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.66■■□□□ 1.06
Lig4Q8BTF7 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.65■■□□□ 1.06
Lig4Q8BTF7 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lig4Q8BTF7 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Lig4Q8BTF7 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lig4Q8BTF7 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Lig4Q8BTF7 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Lig4Q8BTF7 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Gm43530-201ENSMUST00000195920 274 ntBASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
Lig4Q8BTF7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Lig4Q8BTF7 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Lig4Q8BTF7 Gm12821-201ENSMUST00000120022 600 ntBASIC21.58■■□□□ 1.05
Lig4Q8BTF7 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.58■■□□□ 1.05
Lig4Q8BTF7 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Lig4Q8BTF7 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Lig4Q8BTF7 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Lig4Q8BTF7 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Lig4Q8BTF7 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.56■■□□□ 1.04
Lig4Q8BTF7 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms