Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ccdc40Q8BI79 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Gm10399-202ENSMUST00000202768 748 ntBASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc40Q8BI79 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc40Q8BI79 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc40Q8BI79 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc40Q8BI79 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc40Q8BI79 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc40Q8BI79 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc40Q8BI79 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc40Q8BI79 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc40Q8BI79 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc40Q8BI79 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc40Q8BI79 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.08■□□□□ 0.97
Ccdc40Q8BI79 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ccdc40Q8BI79 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
Ccdc40Q8BI79 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ccdc40Q8BI79 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms