Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col7a1Q63870 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col7a1Q63870 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col7a1Q63870 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col7a1Q63870 Gm10812-201ENSMUST00000099864 546 ntBASIC17.49■□□□□ 0.39
Col7a1Q63870 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC17.49■□□□□ 0.39
Col7a1Q63870 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col7a1Q63870 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col7a1Q63870 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Col7a1Q63870 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col7a1Q63870 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col7a1Q63870 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Gm13234-201ENSMUST00000120010 747 ntBASIC17.47■□□□□ 0.39
Col7a1Q63870 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col7a1Q63870 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col7a1Q63870 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col7a1Q63870 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col7a1Q63870 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col7a1Q63870 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Col7a1Q63870 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col7a1Q63870 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.46■□□□□ 0.39
Col7a1Q63870 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col7a1Q63870 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.46■□□□□ 0.39
Col7a1Q63870 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col7a1Q63870 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col7a1Q63870 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col7a1Q63870 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col7a1Q63870 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col7a1Q63870 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col7a1Q63870 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col7a1Q63870 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col7a1Q63870 Reep4-203ENSMUST00000226563 1444 ntBASIC17.45■□□□□ 0.38
Col7a1Q63870 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col7a1Q63870 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Col7a1Q63870 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.44■□□□□ 0.38
Col7a1Q63870 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col7a1Q63870 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Col7a1Q63870 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col7a1Q63870 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.44■□□□□ 0.38
Col7a1Q63870 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col7a1Q63870 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.44■□□□□ 0.38
Col7a1Q63870 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.43■□□□□ 0.38
Col7a1Q63870 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.43■□□□□ 0.38
Col7a1Q63870 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Col7a1Q63870 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.43■□□□□ 0.38
Col7a1Q63870 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Col7a1Q63870 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col7a1Q63870 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Col7a1Q63870 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col7a1Q63870 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.42■□□□□ 0.38
Col7a1Q63870 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col7a1Q63870 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.42■□□□□ 0.38
Col7a1Q63870 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
Col7a1Q63870 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.41■□□□□ 0.38
Col7a1Q63870 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col7a1Q63870 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.41■□□□□ 0.38
Col7a1Q63870 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Col7a1Q63870 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.4■□□□□ 0.38
Col7a1Q63870 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Col7a1Q63870 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col7a1Q63870 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.4■□□□□ 0.38
Col7a1Q63870 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.4■□□□□ 0.38
Col7a1Q63870 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col7a1Q63870 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.39■□□□□ 0.38
Col7a1Q63870 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col7a1Q63870 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col7a1Q63870 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Col7a1Q63870 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col7a1Q63870 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Col7a1Q63870 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col7a1Q63870 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.38■□□□□ 0.37
Col7a1Q63870 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col7a1Q63870 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms