Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Nr1h4Q60641 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Nr1h4Q60641 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.39■□□□□ 0.69
Nr1h4Q60641 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Nr1h4Q60641 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nr1h4Q60641 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nr1h4Q60641 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nr1h4Q60641 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nr1h4Q60641 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nr1h4Q60641 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nr1h4Q60641 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.37■□□□□ 0.69
Nr1h4Q60641 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Nr1h4Q60641 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nr1h4Q60641 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.36■□□□□ 0.69
Nr1h4Q60641 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Nr1h4Q60641 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nr1h4Q60641 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Nr1h4Q60641 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.35■□□□□ 0.69
Nr1h4Q60641 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Gm11175-201ENSMUST00000116172 543 ntBASIC19.35■□□□□ 0.69
Nr1h4Q60641 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.35■□□□□ 0.69
Nr1h4Q60641 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.35■□□□□ 0.69
Nr1h4Q60641 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.35■□□□□ 0.69
Nr1h4Q60641 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Gm10420-201ENSMUST00000121713 882 ntBASIC19.34■□□□□ 0.69
Nr1h4Q60641 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nr1h4Q60641 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Nr1h4Q60641 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nr1h4Q60641 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nr1h4Q60641 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.33■□□□□ 0.69
Nr1h4Q60641 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nr1h4Q60641 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nr1h4Q60641 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Nr1h4Q60641 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nr1h4Q60641 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nr1h4Q60641 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nr1h4Q60641 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nr1h4Q60641 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Nr1h4Q60641 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nr1h4Q60641 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nr1h4Q60641 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nr1h4Q60641 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Nr1h4Q60641 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nr1h4Q60641 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms