Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col27a1Q5QNQ9 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Col27a1Q5QNQ9 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col27a1Q5QNQ9 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col27a1Q5QNQ9 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col27a1Q5QNQ9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.33■□□□□ 0.85
Col27a1Q5QNQ9 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col27a1Q5QNQ9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Col27a1Q5QNQ9 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
Col27a1Q5QNQ9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.31■□□□□ 0.84
Col27a1Q5QNQ9 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col27a1Q5QNQ9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col27a1Q5QNQ9 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col27a1Q5QNQ9 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col27a1Q5QNQ9 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Col27a1Q5QNQ9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Gm13234-201ENSMUST00000120010 747 ntBASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col27a1Q5QNQ9 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Gm10252-201ENSMUST00000209541 832 ntBASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Gm9988-201ENSMUST00000069786 435 ntBASIC20.25■□□□□ 0.83
Col27a1Q5QNQ9 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col27a1Q5QNQ9 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms