Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Rps24-207ENSMUST00000224568 714 ntBASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col28a1Q2UY11 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col28a1Q2UY11 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Gm43566-201ENSMUST00000196851 808 ntBASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col28a1Q2UY11 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.72■□□□□ 0.75
Col28a1Q2UY11 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col28a1Q2UY11 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col28a1Q2UY11 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.69■□□□□ 0.74
Col28a1Q2UY11 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col28a1Q2UY11 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col28a1Q2UY11 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Gm45444-201ENSMUST00000211394 898 ntBASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms