Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lire1P11260 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.06■□□□□ 0.64
Lire1P11260 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.06■□□□□ 0.64
Lire1P11260 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
Lire1P11260 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lire1P11260 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.05■□□□□ 0.64
Lire1P11260 Gm13241-201ENSMUST00000094493 780 ntBASIC19.05■□□□□ 0.64
Lire1P11260 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.05■□□□□ 0.64
Lire1P11260 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.05■□□□□ 0.64
Lire1P11260 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.05■□□□□ 0.64
Lire1P11260 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lire1P11260 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Lire1P11260 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.04■□□□□ 0.64
Lire1P11260 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Lire1P11260 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lire1P11260 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lire1P11260 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Lire1P11260 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.04■□□□□ 0.64
Lire1P11260 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lire1P11260 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.03■□□□□ 0.64
Lire1P11260 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.03■□□□□ 0.64
Lire1P11260 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
Lire1P11260 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lire1P11260 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lire1P11260 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.02■□□□□ 0.64
Lire1P11260 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lire1P11260 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.02■□□□□ 0.64
Lire1P11260 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lire1P11260 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Lire1P11260 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Lire1P11260 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.01■□□□□ 0.63
Lire1P11260 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.01■□□□□ 0.63
Lire1P11260 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.01■□□□□ 0.63
Lire1P11260 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.01■□□□□ 0.63
Lire1P11260 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Lire1P11260 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lire1P11260 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lire1P11260 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Lire1P11260 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.99■□□□□ 0.63
Lire1P11260 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Lire1P11260 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Lire1P11260 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Lire1P11260 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lire1P11260 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
Lire1P11260 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Lire1P11260 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.98■□□□□ 0.63
Lire1P11260 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC18.98■□□□□ 0.63
Lire1P11260 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Lire1P11260 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms