Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col5a1O88207 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC18.81■□□□□ 0.6
Col5a1O88207 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
Col5a1O88207 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.81■□□□□ 0.6
Col5a1O88207 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col5a1O88207 Cdc34b-202ENSMUST00000188741 1252 ntBASIC18.8■□□□□ 0.6
Col5a1O88207 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.8■□□□□ 0.6
Col5a1O88207 Gm43530-201ENSMUST00000195920 274 ntBASIC18.8■□□□□ 0.6
Col5a1O88207 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col5a1O88207 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Col5a1O88207 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col5a1O88207 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col5a1O88207 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col5a1O88207 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col5a1O88207 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col5a1O88207 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
Col5a1O88207 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.79■□□□□ 0.6
Col5a1O88207 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col5a1O88207 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col5a1O88207 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col5a1O88207 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col5a1O88207 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.78■□□□□ 0.6
Col5a1O88207 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.78■□□□□ 0.6
Col5a1O88207 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.78■□□□□ 0.6
Col5a1O88207 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.77■□□□□ 0.6
Col5a1O88207 Gm42642-201ENSMUST00000200683 355 ntBASIC18.77■□□□□ 0.6
Col5a1O88207 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.77■□□□□ 0.6
Col5a1O88207 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col5a1O88207 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Col5a1O88207 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.77■□□□□ 0.59
Col5a1O88207 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col5a1O88207 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col5a1O88207 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Col5a1O88207 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col5a1O88207 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col5a1O88207 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Col5a1O88207 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Gm26833-201ENSMUST00000180899 440 ntBASIC18.75■□□□□ 0.59
Col5a1O88207 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.75■□□□□ 0.59
Col5a1O88207 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Gm37415-201ENSMUST00000192265 2054 ntBASIC18.75■□□□□ 0.59
Col5a1O88207 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col5a1O88207 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col5a1O88207 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col5a1O88207 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col5a1O88207 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col5a1O88207 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.74■□□□□ 0.59
Col5a1O88207 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.74■□□□□ 0.59
Col5a1O88207 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col5a1O88207 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Col5a1O88207 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col5a1O88207 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col5a1O88207 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Col5a1O88207 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Col5a1O88207 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col5a1O88207 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col5a1O88207 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col5a1O88207 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col5a1O88207 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col5a1O88207 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col5a1O88207 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col5a1O88207 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Col5a1O88207 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col5a1O88207 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col5a1O88207 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.72■□□□□ 0.59
Col5a1O88207 Gm10033-202ENSMUST00000211874 928 ntBASIC18.72■□□□□ 0.59
Col5a1O88207 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.71■□□□□ 0.59
Col5a1O88207 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col5a1O88207 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.7■□□□□ 0.58
Col5a1O88207 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Col5a1O88207 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col5a1O88207 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col5a1O88207 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col5a1O88207 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Col5a1O88207 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col5a1O88207 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.7■□□□□ 0.58
Col5a1O88207 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
Col5a1O88207 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms