Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cacna1bO55017 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cacna1bO55017 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Cacna1bO55017 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cacna1bO55017 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.84■□□□□ 0.77
Cacna1bO55017 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Cacna1bO55017 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
Cacna1bO55017 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cacna1bO55017 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.83■□□□□ 0.76
Cacna1bO55017 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Cacna1bO55017 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cacna1bO55017 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Cacna1bO55017 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Cacna1bO55017 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cacna1bO55017 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cacna1bO55017 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cacna1bO55017 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.82■□□□□ 0.76
Cacna1bO55017 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Cacna1bO55017 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.82■□□□□ 0.76
Cacna1bO55017 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cacna1bO55017 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Cacna1bO55017 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Cacna1bO55017 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cacna1bO55017 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cacna1bO55017 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cacna1bO55017 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cacna1bO55017 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.8■□□□□ 0.76
Cacna1bO55017 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cacna1bO55017 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cacna1bO55017 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cacna1bO55017 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cacna1bO55017 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cacna1bO55017 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cacna1bO55017 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.78■□□□□ 0.76
Cacna1bO55017 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Cacna1bO55017 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cacna1bO55017 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cacna1bO55017 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Cacna1bO55017 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cacna1bO55017 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.77■□□□□ 0.76
Cacna1bO55017 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cacna1bO55017 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cacna1bO55017 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cacna1bO55017 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cacna1bO55017 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cacna1bO55017 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cacna1bO55017 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Cacna1bO55017 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cacna1bO55017 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Gm18671-201ENSMUST00000214826 683 ntBASIC19.74■□□□□ 0.75
Cacna1bO55017 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Cacna1bO55017 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Cacna1bO55017 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
Cacna1bO55017 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.74■□□□□ 0.75
Cacna1bO55017 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.74■□□□□ 0.75
Cacna1bO55017 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cacna1bO55017 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cacna1bO55017 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Cacna1bO55017 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cacna1bO55017 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cacna1bO55017 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cacna1bO55017 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.73■□□□□ 0.75
Cacna1bO55017 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cacna1bO55017 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.72■□□□□ 0.75
Cacna1bO55017 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms