Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Chd3B1AR17 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Chd3B1AR17 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
Chd3B1AR17 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chd3B1AR17 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chd3B1AR17 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.13■□□□□ 0.81
Chd3B1AR17 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Chd3B1AR17 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chd3B1AR17 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chd3B1AR17 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chd3B1AR17 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.12■□□□□ 0.81
Chd3B1AR17 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.12■□□□□ 0.81
Chd3B1AR17 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.12■□□□□ 0.81
Chd3B1AR17 Gm6139-201ENSMUST00000079261 882 ntBASIC20.12■□□□□ 0.81
Chd3B1AR17 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Chd3B1AR17 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Chd3B1AR17 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chd3B1AR17 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chd3B1AR17 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.11■□□□□ 0.81
Chd3B1AR17 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Chd3B1AR17 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chd3B1AR17 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Chd3B1AR17 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chd3B1AR17 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.09■□□□□ 0.81
Chd3B1AR17 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Chd3B1AR17 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chd3B1AR17 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.09■□□□□ 0.81
Chd3B1AR17 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chd3B1AR17 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Chd3B1AR17 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Chd3B1AR17 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Chd3B1AR17 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Chd3B1AR17 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Chd3B1AR17 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.08■□□□□ 0.81
Chd3B1AR17 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Chd3B1AR17 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.07■□□□□ 0.8
Chd3B1AR17 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Chd3B1AR17 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.07■□□□□ 0.8
Chd3B1AR17 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.07■□□□□ 0.8
Chd3B1AR17 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chd3B1AR17 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chd3B1AR17 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Chd3B1AR17 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Chd3B1AR17 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.06■□□□□ 0.8
Chd3B1AR17 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chd3B1AR17 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.06■□□□□ 0.8
Chd3B1AR17 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.06■□□□□ 0.8
Chd3B1AR17 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.06■□□□□ 0.8
Chd3B1AR17 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chd3B1AR17 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.06■□□□□ 0.8
Chd3B1AR17 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chd3B1AR17 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chd3B1AR17 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chd3B1AR17 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chd3B1AR17 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chd3B1AR17 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chd3B1AR17 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Chd3B1AR17 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chd3B1AR17 Mir7075-201ENSMUST00000184187 82 ntBASIC20.05■□□□□ 0.8
Chd3B1AR17 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chd3B1AR17 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
Chd3B1AR17 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.04■□□□□ 0.8
Chd3B1AR17 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Gm43173-201ENSMUST00000202246 593 ntBASIC20.04■□□□□ 0.8
Chd3B1AR17 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms