Protein–RNA interactions for Protein: A0A075B638

Trav4-2, T cell receptor alpha variable 4-2 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-2A0A075B638 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-2A0A075B638 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.21■□□□□ 0.19
Trav4-2A0A075B638 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trav4-2A0A075B638 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.21■□□□□ 0.18
Trav4-2A0A075B638 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-2A0A075B638 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-2A0A075B638 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-2A0A075B638 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.17■□□□□ 0.18
Trav4-2A0A075B638 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-2A0A075B638 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-2A0A075B638 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trav4-2A0A075B638 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-2A0A075B638 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-2A0A075B638 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-2A0A075B638 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-2A0A075B638 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 126.2 ms