Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm19014-201ENSMUST00000184828 1189 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm37014-201ENSMUST00000194723 2253 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm24279-201ENSMUST00000104236 131 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm27956-201ENSMUST00000175604 260 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 2310034O05Rik-201ENSMUST00000185221 1107 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm7255-201ENSMUST00000187371 908 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm38007-201ENSMUST00000192187 313 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm6331-201ENSMUST00000217890 450 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Scn11aQ9R053 Gm3283-201ENSMUST00000199319 1350 ntBASIC13.52□□□□□ -0.24
Scn11aQ9R053 AC109214.1-201ENSMUST00000219520 1372 ntBASIC13.52□□□□□ -0.24
Scn11aQ9R053 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm44153-201ENSMUST00000204162 1580 ntBASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm13171-201ENSMUST00000117233 391 ntBASIC13.52□□□□□ -0.25
Scn11aQ9R053 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC13.52□□□□□ -0.25
Scn11aQ9R053 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm4462-201ENSMUST00000166453 492 ntBASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn11aQ9R053 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Gm11996-201ENSMUST00000117538 915 ntBASIC13.51□□□□□ -0.25
Scn11aQ9R053 Gm14993-201ENSMUST00000121180 164 ntBASIC13.51□□□□□ -0.25
Scn11aQ9R053 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Scn11aQ9R053 Gm23400-201ENSMUST00000174994 102 ntBASIC13.51□□□□□ -0.25
Scn11aQ9R053 Gm26463-201ENSMUST00000175065 101 ntBASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms