Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm18983-201ENSMUST00000222884 2729 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm43172-201ENSMUST00000202139 2137 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm26286-201ENSMUST00000104166 134 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm23085-201ENSMUST00000157849 293 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm8100-201ENSMUST00000182906 988 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm5733-201ENSMUST00000190232 939 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 CT009713.8-201ENSMUST00000225448 560 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Ginm1-202ENSMUST00000065124 300 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Mir219a-1-201ENSMUST00000083621 110 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm37348-201ENSMUST00000193104 1789 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm10152-201ENSMUST00000193475 1344 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm9072-201ENSMUST00000218390 1514 ntBASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
Cdc40Q9DC48 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm11509-201ENSMUST00000117358 325 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm12857-201ENSMUST00000117678 592 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm11660-201ENSMUST00000120955 412 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm14665-201ENSMUST00000122294 557 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Mir7032-201ENSMUST00000185154 79 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm5051-201ENSMUST00000204085 485 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 AC122876.1-201ENSMUST00000217619 825 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm18556-201ENSMUST00000219748 1031 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 AC154849.4-201ENSMUST00000224868 365 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 AC135469.1-201ENSMUST00000225984 772 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 CT030637.1-201ENSMUST00000228016 669 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms