Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm4879-201ENSMUST00000122190 1272 ntBASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm16397-201ENSMUST00000122201 494 ntBASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 AC134869.4-202ENSMUST00000224350 837 ntBASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm12247-201ENSMUST00000117585 670 ntBASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm29155-201ENSMUST00000185910 269 ntBASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm28388-201ENSMUST00000186262 437 ntBASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm19009-201ENSMUST00000223072 823 ntBASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.3□□□□□ -0.44
Sf3b1Q99NB9 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm24398-201ENSMUST00000157870 109 ntBASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Mir6958-201ENSMUST00000184207 73 ntBASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC12.29□□□□□ -0.44
Sf3b1Q99NB9 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms