Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gm14441-201ENSMUST00000121960 540 ntBASIC13.68□□□□□ -0.22
Nup88Q8CEC0 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gm8343-201ENSMUST00000182705 994 ntBASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nup88Q8CEC0 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm15432-201ENSMUST00000121106 195 ntBASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm5733-201ENSMUST00000190232 939 ntBASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm26448-201ENSMUST00000082446 203 ntBASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nup88Q8CEC0 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm43963-201ENSMUST00000203466 2488 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm26286-201ENSMUST00000104166 134 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm11511-201ENSMUST00000118146 540 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm15131-201ENSMUST00000119124 595 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm23085-201ENSMUST00000157849 293 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Mir7032-201ENSMUST00000185154 79 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm3332-201ENSMUST00000189337 928 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm43184-201ENSMUST00000197247 542 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 AC141438.2-201ENSMUST00000215068 271 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 AC135114.1-201ENSMUST00000228682 270 ntBASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC13.66□□□□□ -0.22
Nup88Q8CEC0 AC167022.1-201ENSMUST00000218647 1458 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms