Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Vps53Q8CCB4 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm37422-201ENSMUST00000193794 4718 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm5778-201ENSMUST00000171003 1072 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Mir6546-201ENSMUST00000184460 62 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm3332-201ENSMUST00000189337 928 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm8365-201ENSMUST00000197334 648 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Vps53Q8CCB4 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm42427-201ENSMUST00000200473 5292 ntBASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm7593-201ENSMUST00000187246 644 ntBASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Vps53Q8CCB4 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 74.7 ms