Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm17877-201ENSMUST00000192578 814 ntBASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm43868-201ENSMUST00000205187 2114 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm44190-201ENSMUST00000205083 1401 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm18642-201ENSMUST00000206642 1400 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm43760-201ENSMUST00000202120 3015 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm5996-201ENSMUST00000211110 718 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 CT573047.1-201ENSMUST00000223652 851 ntBASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms