Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Lire1P11260 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Lire1P11260 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Lire1P11260 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Lire1P11260 Egfr-201ENSMUST00000020329 10208 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Lire1P11260 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Lire1P11260 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Lire1P11260 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Mthfr-202ENSMUST00000097788 2652 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Gm9083-201ENSMUST00000120423 819 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC11.1□□□□□ -0.63
Lire1P11260 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Gm43947-201ENSMUST00000203019 959 ntBASIC11.1□□□□□ -0.63
Lire1P11260 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.1□□□□□ -0.63
Lire1P11260 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.1□□□□□ -0.63
Lire1P11260 AC165260.3-202ENSMUST00000224550 1031 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm22058-201ENSMUST00000083393 310 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Gm13126-201ENSMUST00000117079 3063 ntBASIC11.1□□□□□ -0.63
Lire1P11260 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Nit1-201ENSMUST00000111289 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Olfr764-ps1-201ENSMUST00000204763 2854 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Lire1P11260 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lire1P11260 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Gm26670-201ENSMUST00000180429 3287 ntBASIC11.09□□□□□ -0.63
Lire1P11260 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC11.09□□□□□ -0.63
Lire1P11260 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Gm12176-201ENSMUST00000121420 875 ntBASIC11.09□□□□□ -0.63
Lire1P11260 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.09□□□□□ -0.63
Lire1P11260 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC11.09□□□□□ -0.63
Lire1P11260 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC11.09□□□□□ -0.63
Lire1P11260 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Lire1P11260 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Lire1P11260 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Lire1P11260 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms