Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AC010141.1-201ENST00000411585 623 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 HOMER2P2-201ENST00000451621 847 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CICP12-201ENST00000455801 843 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 MIR6074-201ENST00000612054 107 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AL136301.1-201ENST00000615830 422 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 AC011498.7-201ENST00000624986 2027 ntBASIC11.41□□□□□ -0.58
CCDC140Q96MF4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 ABR-228ENST00000574437 3196 ntTSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 MIR326-201ENST00000362220 95 ntBASIC11.4□□□□□ -0.58
CCDC140Q96MF4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC099336.1-201ENST00000417053 1171 ntBASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC022210.1-201ENST00000449856 793 ntBASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC119751.2-201ENST00000504529 210 ntBASIC11.4□□□□□ -0.58
CCDC140Q96MF4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CCDC140Q96MF4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms