Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm9358-201ENSMUST00000183067 927 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm27438-201ENSMUST00000183480 110 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Mir7032-201ENSMUST00000185154 79 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm7504-201ENSMUST00000201449 424 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm45219-201ENSMUST00000205602 465 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm2875-201ENSMUST00000211333 360 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm9661-201ENSMUST00000221611 1122 ntBASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ubfd1Q78JW9 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 AC169511.2-201ENSMUST00000226674 2063 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm16166-201ENSMUST00000118291 787 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm12856-201ENSMUST00000119471 1293 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm10731-201ENSMUST00000181171 448 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.32□□□□□ -0.6
Ubfd1Q78JW9 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Ubfd1Q78JW9 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms