Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm11531-201ENSMUST00000117614 555 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm15276-201ENSMUST00000145953 498 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm6114-201ENSMUST00000182472 968 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm37986-201ENSMUST00000193285 383 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm19208-201ENSMUST00000213861 912 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm37201-201ENSMUST00000191845 523 ntBASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm5950-201ENSMUST00000213337 772 ntBASIC11.29□□□□□ -0.6
Col28a1Q2UY11 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 AC154537.1-201ENSMUST00000226101 1304 ntBASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col28a1Q2UY11 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 AC154404.1-201ENSMUST00000223601 2077 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm14130-201ENSMUST00000118417 987 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm2546-201ENSMUST00000182630 991 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 AA914427-201ENSMUST00000193194 1166 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm38314-201ENSMUST00000195709 625 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms