Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sox9Q04887 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sox9Q04887 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.02□□□□□ -0.48
Sox9Q04887 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Sox9Q04887 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sox9Q04887 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Sox9Q04887 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.02□□□□□ -0.49
Sox9Q04887 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.02□□□□□ -0.49
Sox9Q04887 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm14497-201ENSMUST00000119537 580 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Gm11993-201ENSMUST00000121861 820 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm17221-201ENSMUST00000163909 481 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Gm17073-201ENSMUST00000168069 556 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Gm36982-201ENSMUST00000193796 1128 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm18035-201ENSMUST00000211962 589 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Gm9204-201ENSMUST00000212641 947 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC12.02□□□□□ -0.49
Sox9Q04887 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC12.02□□□□□ -0.49
Sox9Q04887 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 CT025689.1-201ENSMUST00000225214 283 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 AC164099.1-201ENSMUST00000227780 333 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm5449-201ENSMUST00000081132 357 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sox9Q04887 Gm6641-201ENSMUST00000196100 1315 ntBASIC12.02□□□□□ -0.49
Sox9Q04887 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Sox9Q04887 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sox9Q04887 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.01□□□□□ -0.49
Sox9Q04887 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.01□□□□□ -0.49
Sox9Q04887 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Sox9Q04887 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Sox9Q04887 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Gm23769-201ENSMUST00000104441 121 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Sox9Q04887 Gm6158-201ENSMUST00000109467 904 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm15197-201ENSMUST00000120526 478 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm14165-201ENSMUST00000121456 952 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm5395-201ENSMUST00000121650 915 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm11434-201ENSMUST00000122379 629 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Gm24078-201ENSMUST00000158184 103 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Gm9487-201ENSMUST00000216600 472 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC12.01□□□□□ -0.49
Sox9Q04887 AC152169.1-201ENSMUST00000223901 701 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.01□□□□□ -0.49
Sox9Q04887 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Sox9Q04887 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sox9Q04887 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms