Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gm6905-201ENSMUST00000205729 511 ntBASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gm10254-201ENSMUST00000052888 867 ntBASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gm37931-201ENSMUST00000194686 2866 ntBASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Brf1Q8CFK2 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm23699-201ENSMUST00000158835 135 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm10807-201ENSMUST00000177134 795 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm9540-201ENSMUST00000188230 478 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm29499-201ENSMUST00000189151 486 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm28329-201ENSMUST00000191208 689 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm29171-201ENSMUST00000191397 486 ntBASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Brf1Q8CFK2 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Brf1Q8CFK2 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gm3150-201ENSMUST00000166418 204 ntBASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gm37835-201ENSMUST00000193305 361 ntBASIC13.99□□□□□ -0.17
Brf1Q8CFK2 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.99□□□□□ -0.17
Brf1Q8CFK2 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Brf1Q8CFK2 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms