Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gm45598-202ENSMUST00000210719 986 ntBASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sh3rf1Q69ZI1 Erich3-203ENSMUST00000189969 3460 ntBASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm43937-201ENSMUST00000204640 3122 ntBASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm8420-201ENSMUST00000097103 598 ntBASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sh3rf1Q69ZI1 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms