Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm19327-201ENSMUST00000220651 3271 ntBASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm6222-202ENSMUST00000182143 629 ntBASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm37201-201ENSMUST00000191845 523 ntBASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Snora73a-201ENSMUST00000082453 205 ntBASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC10.88□□□□□ -0.67
Trim40Q3UWA4 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm19178-201ENSMUST00000217524 1819 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm12058-201ENSMUST00000118614 437 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm24548-201ENSMUST00000158650 108 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm7619-201ENSMUST00000210649 1282 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gm5703-201ENSMUST00000186658 3973 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trim40Q3UWA4 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms