Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm23596-201ENSMUST00000104304 132 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm7851-201ENSMUST00000117574 323 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Ighv4-2-201ENSMUST00000192975 362 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm42629-201ENSMUST00000199063 1102 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 Gm2553-201ENSMUST00000215986 605 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.69□□□□□ -0.22
Limch1Q3UH68 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Limch1Q3UH68 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC13.68□□□□□ -0.22
Limch1Q3UH68 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.68□□□□□ -0.22
Limch1Q3UH68 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gm8285-201ENSMUST00000208293 759 ntBASIC13.68□□□□□ -0.22
Limch1Q3UH68 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 AC135469.1-201ENSMUST00000225984 772 ntBASIC13.68□□□□□ -0.22
Limch1Q3UH68 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Limch1Q3UH68 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm11667-201ENSMUST00000119828 486 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm37246-201ENSMUST00000192665 835 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm8420-201ENSMUST00000097103 598 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms