Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm22144-201ENSMUST00000157402 102 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm8100-201ENSMUST00000182906 988 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm3332-201ENSMUST00000189337 928 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Ighv1-48-201ENSMUST00000191795 294 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm37299-201ENSMUST00000193951 826 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Gm45909-201ENSMUST00000212413 1031 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm19994-201ENSMUST00000217086 586 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC11.2□□□□□ -0.62
Sox3P53784 Gm6722-201ENSMUST00000221586 390 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm8894-201ENSMUST00000074642 666 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 AC158355.1-201ENSMUST00000215895 1705 ntBASIC11.2□□□□□ -0.62
Sox3P53784 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox3P53784 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
Sox3P53784 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox3P53784 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Sox3P53784 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
Sox3P53784 Gm14724-201ENSMUST00000118400 537 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Gm8199-201ENSMUST00000121323 823 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Gm4862-201ENSMUST00000170405 438 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC11.19□□□□□ -0.62
Sox3P53784 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC11.19□□□□□ -0.62
Sox3P53784 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gm28388-201ENSMUST00000186262 437 ntBASIC11.19□□□□□ -0.62
Sox3P53784 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gm45120-201ENSMUST00000208880 408 ntBASIC11.19□□□□□ -0.62
Sox3P53784 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Gm3318-201ENSMUST00000217604 1183 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Gm807-202ENSMUST00000224929 408 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Sox3P53784 Gm26448-201ENSMUST00000082446 203 ntBASIC11.19□□□□□ -0.62
Sox3P53784 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Sox3P53784 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.19□□□□□ -0.62
Sox3P53784 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox3P53784 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms