Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Traf1P39428 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Traf1P39428 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC13.51□□□□□ -0.25
Traf1P39428 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Traf1P39428 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Traf1P39428 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.5□□□□□ -0.25
Traf1P39428 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC13.5□□□□□ -0.25
Traf1P39428 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Traf1P39428 Gm13328-201ENSMUST00000120816 1020 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Gm7150-201ENSMUST00000122032 981 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC13.5□□□□□ -0.25
Traf1P39428 Gm23771-201ENSMUST00000178702 110 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC13.5□□□□□ -0.25
Traf1P39428 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC13.5□□□□□ -0.25
Traf1P39428 AC124433.1-201ENSMUST00000224483 1063 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Traf1P39428 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 AC158355.1-201ENSMUST00000215895 1705 ntBASIC13.5□□□□□ -0.25
Traf1P39428 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Traf1P39428 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Traf1P39428 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 Gm5380-201ENSMUST00000119296 2136 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Traf1P39428 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 CT573086.2-201ENSMUST00000227277 4992 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Gm11836-201ENSMUST00000121022 441 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.49□□□□□ -0.25
Traf1P39428 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.49□□□□□ -0.25
Traf1P39428 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 Gm27910-201ENSMUST00000185004 107 ntBASIC13.49□□□□□ -0.25
Traf1P39428 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC13.49□□□□□ -0.25
Traf1P39428 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Gm45219-201ENSMUST00000205602 465 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC13.49□□□□□ -0.25
Traf1P39428 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Traf1P39428 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Traf1P39428 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Gm5124-202ENSMUST00000132683 2083 ntBASIC13.49□□□□□ -0.25
Traf1P39428 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Traf1P39428 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms