Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col1a1P11087 Gm19013-201ENSMUST00000183895 1222 ntBASIC13.48□□□□□ -0.25
Col1a1P11087 Gm19014-201ENSMUST00000184828 1189 ntBASIC13.48□□□□□ -0.25
Col1a1P11087 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC13.48□□□□□ -0.25
Col1a1P11087 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC13.48□□□□□ -0.25
Col1a1P11087 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC13.48□□□□□ -0.25
Col1a1P11087 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col1a1P11087 Gm9791-201ENSMUST00000060997 447 ntBASIC13.48□□□□□ -0.25
Col1a1P11087 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col1a1P11087 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col1a1P11087 Gm7589-201ENSMUST00000085631 534 ntBASIC13.48□□□□□ -0.25
Col1a1P11087 Krtap12-1-201ENSMUST00000092370 656 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col1a1P11087 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col1a1P11087 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col1a1P11087 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col1a1P11087 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col1a1P11087 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
Col1a1P11087 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col1a1P11087 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 AC154517.2-201ENSMUST00000220829 2458 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col1a1P11087 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Gm12418-201ENSMUST00000118116 942 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Gm1826-201ENSMUST00000118646 1162 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Gm11993-201ENSMUST00000121861 820 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Olfml3-204ENSMUST00000169286 874 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Gm7069-201ENSMUST00000182418 1008 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 AC122024.3-201ENSMUST00000217719 294 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 AC156790.2-201ENSMUST00000227115 568 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col1a1P11087 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Gm28424-201ENSMUST00000187393 1319 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col1a1P11087 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col1a1P11087 Gm42499-201ENSMUST00000196193 1412 ntBASIC13.47□□□□□ -0.25
Col1a1P11087 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Col1a1P11087 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Col1a1P11087 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Col1a1P11087 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Col1a1P11087 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm15136-201ENSMUST00000120552 533 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm16547-201ENSMUST00000159474 293 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm8384-201ENSMUST00000190905 704 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC13.46□□□□□ -0.25
Col1a1P11087 CT025689.1-201ENSMUST00000225214 283 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Gm26782-203ENSMUST00000227103 751 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm6564-201ENSMUST00000075377 619 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Gm25580-201ENSMUST00000083409 327 ntBASIC13.46□□□□□ -0.25
Col1a1P11087 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col1a1P11087 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms