Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Chmp6P0C0A3 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm12857-201ENSMUST00000117678 592 ntBASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Wipf2-201ENSMUST00000037480 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chmp6P0C0A3 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm2553-201ENSMUST00000215986 605 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm21811-201ENSMUST00000096485 930 ntBASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chmp6P0C0A3 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms