Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm44329-201ENSMUST00000197469 112 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm12795-201ENSMUST00000117594 539 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm37458-201ENSMUST00000194055 410 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm42518-201ENSMUST00000196277 938 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm5451-201ENSMUST00000080545 579 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm14942-201ENSMUST00000119642 336 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm12899-201ENSMUST00000120565 551 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Mir1901-201ENSMUST00000122616 78 ntBASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sf3b1Q99NB9 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms