Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm14999-201ENSMUST00000121039 624 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Rprl1-201ENSMUST00000158050 327 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm27023-201ENSMUST00000182372 285 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm44967-201ENSMUST00000207047 631 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm18212-201ENSMUST00000211678 889 ntBASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.59
Col28a1Q2UY11 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Mir5120-201ENSMUST00000175020 78 ntBASIC11.33□□□□□ -0.6
Col28a1Q2UY11 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col28a1Q2UY11 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Gm23270-201ENSMUST00000104055 131 ntBASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms