Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.23□□□□□ -0.45
Usp4P35123 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC12.23□□□□□ -0.45
Usp4P35123 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Gm44967-201ENSMUST00000207047 631 ntBASIC12.23□□□□□ -0.45
Usp4P35123 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC12.23□□□□□ -0.45
Usp4P35123 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.23□□□□□ -0.45
Usp4P35123 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Usp4P35123 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp4P35123 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Usp4P35123 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Gm29245-201ENSMUST00000187332 1416 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Usp4P35123 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Gm12164-201ENSMUST00000121695 551 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC12.22□□□□□ -0.45
Usp4P35123 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Usp4P35123 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Gm3096-201ENSMUST00000185770 364 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Gm5950-201ENSMUST00000213337 772 ntBASIC12.22□□□□□ -0.45
Usp4P35123 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Usp4P35123 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Usp4P35123 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usp4P35123 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp4P35123 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Usp4P35123 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.21□□□□□ -0.45
Usp4P35123 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC12.21□□□□□ -0.45
Usp4P35123 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.45
Usp4P35123 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.21□□□□□ -0.45
Usp4P35123 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usp4P35123 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Usp4P35123 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Usp4P35123 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Usp4P35123 Gm5419-201ENSMUST00000119301 527 ntBASIC12.21□□□□□ -0.45
Usp4P35123 Gm11960-201ENSMUST00000122068 925 ntBASIC12.21□□□□□ -0.45
Usp4P35123 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms