Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 AC164702.1-201ENSMUST00000220135 2212 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Olfr202-203ENSMUST00000217485 1321 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Zfp780b-203ENSMUST00000205874 1907 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm28719-201ENSMUST00000187779 1757 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm43677-201ENSMUST00000198098 2378 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm6039-201ENSMUST00000121667 1250 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 BB218582-201ENSMUST00000123623 1024 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Acss2os-201ENSMUST00000148685 629 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm17134-201ENSMUST00000166593 437 ntTSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 1700029M03Rik-202ENSMUST00000187517 357 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm28269-201ENSMUST00000189511 559 ntAPPRIS P1 TSL 3 BASIC9.33□□□□□ -0.92
Hoxd3P09027 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Ociad2-206ENSMUST00000202012 876 ntTSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 4933402C06Rik-203ENSMUST00000207559 1227 ntTSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 4930480M12Rik-201ENSMUST00000221084 550 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm270-201ENSMUST00000223010 976 ntBASIC9.33□□□□□ -0.92
Hoxd3P09027 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Gm17229-201ENSMUST00000097355 1138 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC9.33□□□□□ -0.92
Hoxd3P09027 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Hoxd3P09027 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Hoxd3P09027 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Gm38368-201ENSMUST00000193181 1335 ntBASIC9.32□□□□□ -0.92
Hoxd3P09027 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Olfr23-202ENSMUST00000214210 2527 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC9.32□□□□□ -0.92
Hoxd3P09027 Gm11511-201ENSMUST00000118146 540 ntBASIC9.32□□□□□ -0.92
Hoxd3P09027 Gm15741-201ENSMUST00000119401 754 ntBASIC9.32□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms