Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Fhad1-203ENSMUST00000105780 4809 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Ralgapa1-212ENSMUST00000226244 8841 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Zfp92-201ENSMUST00000033740 5767 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Nek10-206ENSMUST00000224491 9567 ntAPPRIS P2 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Pkn3-201ENSMUST00000045246 3113 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Zfp827-202ENSMUST00000098614 7581 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm16576-201ENSMUST00000128342 5404 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Tenm1-201ENSMUST00000016294 8365 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm12314-201ENSMUST00000118104 538 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm12201-201ENSMUST00000120657 1234 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm22331-201ENSMUST00000158066 136 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm7029-201ENSMUST00000173226 450 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC9.6□□□□□ -0.87
Hmgb3O54879 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm5781-201ENSMUST00000219792 443 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Gm10076-201ENSMUST00000073238 384 ntBASIC9.6□□□□□ -0.87
Hmgb3O54879 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
Hmgb3O54879 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hmgb3O54879 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Pigk-204ENSMUST00000159899 4737 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Nrp2-206ENSMUST00000114157 6357 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ehmt1-210ENSMUST00000147147 5953 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm12091-201ENSMUST00000146791 830 ntBASIC9.59□□□□□ -0.87
Hmgb3O54879 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC9.59□□□□□ -0.87
Hmgb3O54879 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm29705-201ENSMUST00000212598 474 ntBASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm45925-201ENSMUST00000218882 744 ntBASIC9.59□□□□□ -0.87
Hmgb3O54879 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm8420-201ENSMUST00000097103 598 ntBASIC9.59□□□□□ -0.87
Hmgb3O54879 Plec-207ENSMUST00000076442 15439 ntAPPRIS P4 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Igf1r-201ENSMUST00000005671 11409 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 155.5 ms