Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Gm4982-201ENSMUST00000160440 1098 ntBASIC13.63□□□□□ -0.23
Scn11aQ9R053 Gm4868-201ENSMUST00000164138 789 ntBASIC13.63□□□□□ -0.23
Scn11aQ9R053 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Gm45758-201ENSMUST00000212448 1006 ntBASIC13.63□□□□□ -0.23
Scn11aQ9R053 Id2-203ENSMUST00000222667 958 ntBASIC13.63□□□□□ -0.23
Scn11aQ9R053 AC154759.1-201ENSMUST00000224137 1159 ntBASIC13.63□□□□□ -0.23
Scn11aQ9R053 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Scn11aQ9R053 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm6641-201ENSMUST00000196100 1315 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Snord17-201ENSMUST00000104526 238 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm14270-201ENSMUST00000118388 846 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm13422-201ENSMUST00000118834 504 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Mir1905-201ENSMUST00000122779 82 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm15620-201ENSMUST00000122949 270 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm16167-201ENSMUST00000160428 1065 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm44814-201ENSMUST00000207018 434 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 AC115304.2-201ENSMUST00000226399 332 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.62□□□□□ -0.23
Scn11aQ9R053 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Scn11aQ9R053 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Gm9081-201ENSMUST00000182346 991 ntBASIC13.61□□□□□ -0.23
Scn11aQ9R053 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Scn11aQ9R053 AC105408.1-201ENSMUST00000227771 802 ntBASIC13.61□□□□□ -0.23
Scn11aQ9R053 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Scn11aQ9R053 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 61.3 ms