Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Nipal3-202ENSMUST00000105856 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Fgfr1-213ENSMUST00000167764 2915 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Rpgrip1-201ENSMUST00000111600 4565 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Cd160-203ENSMUST00000165991 2458 ntAPPRIS ALT2 TSL 3 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Rad51c-202ENSMUST00000067692 3944 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Sema4g-201ENSMUST00000026225 4548 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Epb41l4a-201ENSMUST00000025234 3853 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Zfp672-202ENSMUST00000064786 2765 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Trem1Q9JKE2 Gpr68-202ENSMUST00000110065 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Mmp9-201ENSMUST00000017881 3175 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Sfi1-210ENSMUST00000140846 3604 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Msln-201ENSMUST00000075884 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Pard3-201ENSMUST00000026921 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Tnfsf18-201ENSMUST00000086084 2066 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 AL645783.1-201ENSMUST00000221416 1832 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm15903-202ENSMUST00000199631 3518 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 5930420M18Rik-201ENSMUST00000202893 2281 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Zfp873-203ENSMUST00000209622 2284 ntTSL 2 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Fhod1-201ENSMUST00000014922 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gad1-201ENSMUST00000094934 3355 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm43416-201ENSMUST00000201916 1015 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm7446-201ENSMUST00000221035 1240 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm19220-201ENSMUST00000222682 803 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 AC165260.3-202ENSMUST00000224550 1031 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Gm19409-201ENSMUST00000198244 2858 ntBASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Mov10-207ENSMUST00000168015 3460 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Mov10-201ENSMUST00000002297 3498 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Bcl2l11-202ENSMUST00000089634 2301 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Trem1Q9JKE2 Mrpl51-201ENSMUST00000032485 3427 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Gm37608-201ENSMUST00000195696 1880 ntBASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Stra6-201ENSMUST00000034880 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Gm37582-201ENSMUST00000192953 1409 ntBASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Trem1Q9JKE2 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Trem1Q9JKE2 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 82.6 ms