Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm12846-201ENSMUST00000120431 1373 ntBASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 AC207128.2-201ENSMUST00000223708 1924 ntBASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 AC122459.1-201ENSMUST00000228373 885 ntBASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 AC154171.2-201ENSMUST00000225219 2652 ntBASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim40Q3UWA4 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 AC126257.1-201ENSMUST00000213195 1536 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm14999-201ENSMUST00000121039 624 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm13570-201ENSMUST00000140763 309 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm7809-201ENSMUST00000153199 742 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm6114-201ENSMUST00000182472 968 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm6439-201ENSMUST00000199849 862 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim40Q3UWA4 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms