Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox9Q04887 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Mir453-201ENSMUST00000104732 82 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm4868-201ENSMUST00000164138 789 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm10807-201ENSMUST00000177134 795 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Gm26272-201ENSMUST00000179241 132 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm5706-201ENSMUST00000181525 993 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sox9Q04887 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm18123-201ENSMUST00000210874 822 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Gm5468-202ENSMUST00000227851 682 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox9Q04887 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Sox9Q04887 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Sox9Q04887 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sox9Q04887 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.08□□□□□ -0.47
Sox9Q04887 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
Sox9Q04887 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.08□□□□□ -0.48
Sox9Q04887 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Gm13094-201ENSMUST00000117930 409 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm4462-201ENSMUST00000166453 492 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Gm7627-201ENSMUST00000183205 999 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm6606-201ENSMUST00000193613 947 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm7939-201ENSMUST00000201233 1050 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 BC080696-201ENSMUST00000202858 1218 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm2448-201ENSMUST00000207080 559 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
Sox9Q04887 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC12.08□□□□□ -0.48
Sox9Q04887 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.08□□□□□ -0.48
Sox9Q04887 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.08□□□□□ -0.48
Sox9Q04887 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.08□□□□□ -0.48
Sox9Q04887 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Sox9Q04887 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC12.08□□□□□ -0.48
Sox9Q04887 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.08□□□□□ -0.48
Sox9Q04887 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Sox9Q04887 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox9Q04887 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sox9Q04887 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sox9Q04887 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.07□□□□□ -0.48
Sox9Q04887 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sox9Q04887 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sox9Q04887 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sox9Q04887 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.07□□□□□ -0.48
Sox9Q04887 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms