Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col6a1Q04857 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col6a1Q04857 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col6a1Q04857 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.93□□□□□ -0.34
Col6a1Q04857 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col6a1Q04857 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col6a1Q04857 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm23912-201ENSMUST00000104687 87 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm14807-201ENSMUST00000116640 983 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm5419-201ENSMUST00000119301 527 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm14247-201ENSMUST00000120950 237 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm10169-201ENSMUST00000121822 348 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm9630-201ENSMUST00000178304 885 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm19587-201ENSMUST00000191395 545 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm18706-201ENSMUST00000210053 1066 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 CT573086.4-201ENSMUST00000226729 342 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Gm16380-201ENSMUST00000077997 478 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Rubie-203ENSMUST00000227803 2430 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col6a1Q04857 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.92□□□□□ -0.34
Col6a1Q04857 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col6a1Q04857 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm23272-201ENSMUST00000104053 129 ntBASIC12.91□□□□□ -0.34
Col6a1Q04857 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm15003-201ENSMUST00000118884 446 ntBASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm5909-201ENSMUST00000119768 1281 ntBASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.91□□□□□ -0.34
Col6a1Q04857 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.91□□□□□ -0.34
Col6a1Q04857 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.91□□□□□ -0.34
Col6a1Q04857 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col6a1Q04857 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms