Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.24□□□□□ -0.61
Sox3P53784 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm27910-201ENSMUST00000185004 107 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm5298-201ENSMUST00000201122 892 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC11.24□□□□□ -0.61
Sox3P53784 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm9139-201ENSMUST00000218817 700 ntBASIC11.24□□□□□ -0.61
Sox3P53784 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Mirlet7i-201ENSMUST00000083472 85 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Mir483-201ENSMUST00000093631 73 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.24□□□□□ -0.61
Sox3P53784 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Sox3P53784 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Sox3P53784 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sox3P53784 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC11.24□□□□□ -0.61
Sox3P53784 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox3P53784 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Sox3P53784 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.23□□□□□ -0.61
Sox3P53784 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC11.23□□□□□ -0.61
Sox3P53784 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Mir1956-201ENSMUST00000157748 65 ntBASIC11.23□□□□□ -0.61
Sox3P53784 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC11.23□□□□□ -0.61
Sox3P53784 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Gm43962-201ENSMUST00000203898 190 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Gm7395-201ENSMUST00000216059 1045 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Gm9111-201ENSMUST00000219394 709 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Sox3P53784 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Gm7278-201ENSMUST00000119836 1401 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.23□□□□□ -0.61
Sox3P53784 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Sox3P53784 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Sox3P53784 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox3P53784 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Sox3P53784 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms