Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm44999-201ENSMUST00000207456 1493 ntBASIC12.34□□□□□ -0.43
Shmt1P50431 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Shmt1P50431 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.33□□□□□ -0.43
Shmt1P50431 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Shmt1P50431 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Shmt1P50431 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Shmt1P50431 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.33□□□□□ -0.44
Shmt1P50431 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Shmt1P50431 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.33□□□□□ -0.44
Shmt1P50431 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Shmt1P50431 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Gm11667-201ENSMUST00000119828 486 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm7150-201ENSMUST00000122032 981 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm17391-201ENSMUST00000171036 126 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm20495-201ENSMUST00000173902 235 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm43916-201ENSMUST00000205062 967 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm44506-201ENSMUST00000206278 965 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm8285-201ENSMUST00000208293 759 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gm6108-201ENSMUST00000208365 367 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Shmt1P50431 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Shmt1P50431 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.33□□□□□ -0.44
Shmt1P50431 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Shmt1P50431 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Shmt1P50431 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Shmt1P50431 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm11949-201ENSMUST00000117640 372 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm14071-201ENSMUST00000117817 509 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm15725-201ENSMUST00000119947 1090 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm12029-201ENSMUST00000120073 832 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.32□□□□□ -0.44
Shmt1P50431 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm4654-201ENSMUST00000183305 982 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm17831-201ENSMUST00000205579 900 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm44545-201ENSMUST00000208262 746 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC12.32□□□□□ -0.44
Shmt1P50431 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.32□□□□□ -0.44
Shmt1P50431 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.32□□□□□ -0.44
Shmt1P50431 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Shmt1P50431 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Shmt1P50431 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Shmt1P50431 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Shmt1P50431 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Shmt1P50431 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC12.31□□□□□ -0.44
Shmt1P50431 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Shmt1P50431 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Shmt1P50431 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Shmt1P50431 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms