Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm43962-201ENSMUST00000203898 190 ntBASIC11.24□□□□□ -0.61
Tnfsf4P43488 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm9368-201ENSMUST00000219348 831 ntBASIC11.24□□□□□ -0.61
Tnfsf4P43488 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Tnfsf4P43488 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.24□□□□□ -0.61
Tnfsf4P43488 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Tnfsf4P43488 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm12742-201ENSMUST00000117326 410 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm32999-201ENSMUST00000192693 562 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Rprl1-202ENSMUST00000198476 238 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm2553-201ENSMUST00000215986 605 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm5705-201ENSMUST00000066241 711 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm25857-201ENSMUST00000082788 129 ntBASIC11.23□□□□□ -0.61
Tnfsf4P43488 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Tnfsf4P43488 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Gm13392-201ENSMUST00000117708 150 ntBASIC11.22□□□□□ -0.61
Tnfsf4P43488 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Tnfsf4P43488 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms