Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Asb1-201ENSMUST00000027538 5826 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
Cdx1P18111 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm42449-201ENSMUST00000200349 2258 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 AC122881.1-201ENSMUST00000225757 2695 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm6447-201ENSMUST00000118905 835 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Gm13297-201ENSMUST00000120205 934 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Gm14381-201ENSMUST00000122105 414 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm26185-201ENSMUST00000157692 266 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Gm16570-201ENSMUST00000161951 436 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC9.47□□□□□ -0.89
Cdx1P18111 Mospd4-201ENSMUST00000180618 576 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm7046-201ENSMUST00000221351 977 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Gm19163-201ENSMUST00000223313 780 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Cdx1P18111 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm8420-201ENSMUST00000097103 598 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Nrbp2-201ENSMUST00000019516 2495 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Olfr1090-202ENSMUST00000215991 2103 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm7537-201ENSMUST00000221660 1414 ntBASIC9.47□□□□□ -0.89
Cdx1P18111 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Cdx1P18111 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Cdx1P18111 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.89
Cdx1P18111 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
Cdx1P18111 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC9.46□□□□□ -0.89
Cdx1P18111 H2-Ob-201ENSMUST00000095342 2671 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
Cdx1P18111 Tmem126b-201ENSMUST00000032843 2259 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Cdx1P18111 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
Cdx1P18111 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Cdx1P18111 Gm11591-201ENSMUST00000120063 702 ntBASIC9.46□□□□□ -0.9
Cdx1P18111 Gm43692-201ENSMUST00000198236 1062 ntBASIC9.46□□□□□ -0.9
Cdx1P18111 Gm18056-201ENSMUST00000207670 568 ntBASIC9.46□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms