Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm23200-201ENSMUST00000104379 132 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm13996-201ENSMUST00000118456 430 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm14832-201ENSMUST00000121289 322 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Rprl1-202ENSMUST00000198476 238 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm44958-201ENSMUST00000203734 736 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm39404-201ENSMUST00000216350 313 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 CT025694.1-201ENSMUST00000226188 934 ntBASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sh3rf1Q69ZI1 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm14263-201ENSMUST00000117955 746 ntBASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm12314-201ENSMUST00000118104 538 ntBASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm5070-201ENSMUST00000177599 862 ntBASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm37986-201ENSMUST00000193285 383 ntBASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sh3rf1Q69ZI1 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms