Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC13.83□□□□□ -0.2
Ctr9Q62018 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Ctr9Q62018 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ctr9Q62018 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 AC124433.1-202ENSMUST00000224762 1535 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Gm8459-201ENSMUST00000162504 760 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 AC154290.1-201ENSMUST00000223786 1240 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ctr9Q62018 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.82□□□□□ -0.2
Ctr9Q62018 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ctr9Q62018 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Ctr9Q62018 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Gm15352-201ENSMUST00000118696 270 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC13.81□□□□□ -0.2
Ctr9Q62018 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC13.81□□□□□ -0.2
Ctr9Q62018 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Mir8115-201ENSMUST00000184992 119 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 Mir8093-201ENSMUST00000185043 137 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Gm17831-201ENSMUST00000205579 900 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.81□□□□□ -0.2
Ctr9Q62018 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
Ctr9Q62018 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ctr9Q62018 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ctr9Q62018 Gm18262-201ENSMUST00000222560 1946 ntBASIC13.8□□□□□ -0.2
Ctr9Q62018 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.8□□□□□ -0.2
Ctr9Q62018 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ctr9Q62018 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ctr9Q62018 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms