Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.85□□□□□ -0.35
Lig3P97386 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC12.85□□□□□ -0.35
Lig3P97386 Gm34023-201ENSMUST00000195539 217 ntBASIC12.85□□□□□ -0.35
Lig3P97386 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Gm39404-201ENSMUST00000216350 313 ntBASIC12.85□□□□□ -0.35
Lig3P97386 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Lig3P97386 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Lig3P97386 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lig3P97386 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Lig3P97386 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Gm3671-201ENSMUST00000182463 1007 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm19166-201ENSMUST00000196041 1063 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Gm9132-201ENSMUST00000210182 832 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Gm45398-201ENSMUST00000210561 165 ntBASIC12.84□□□□□ -0.35
Lig3P97386 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm18974-201ENSMUST00000221478 1031 ntBASIC12.84□□□□□ -0.35
Lig3P97386 AC154176.1-201ENSMUST00000225897 220 ntBASIC12.84□□□□□ -0.35
Lig3P97386 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Gm9873-201ENSMUST00000063891 1097 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Lig3P97386 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Lig3P97386 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.84□□□□□ -0.35
Lig3P97386 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lig3P97386 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Lig3P97386 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.83□□□□□ -0.35
Lig3P97386 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lig3P97386 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Lig3P97386 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lig3P97386 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lig3P97386 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lig3P97386 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.83□□□□□ -0.35
Lig3P97386 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Btrc-209ENSMUST00000224478 2194 ntBASIC12.83□□□□□ -0.36
Lig3P97386 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lig3P97386 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms