Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Traf1P39428 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Gm7537-201ENSMUST00000221660 1414 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Traf1P39428 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC13.56□□□□□ -0.24
Traf1P39428 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC13.56□□□□□ -0.24
Traf1P39428 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Gm11246-201ENSMUST00000120880 345 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC13.56□□□□□ -0.24
Traf1P39428 Gm6548-201ENSMUST00000167498 1165 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm21092-201ENSMUST00000178995 955 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm12407-201ENSMUST00000180219 324 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm28937-201ENSMUST00000185413 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm29400-201ENSMUST00000187208 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm28662-201ENSMUST00000188446 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm28251-201ENSMUST00000188835 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm37318-201ENSMUST00000194325 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm38017-201ENSMUST00000194768 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm37287-201ENSMUST00000195449 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm37793-201ENSMUST00000195548 695 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm44126-201ENSMUST00000204831 514 ntBASIC13.56□□□□□ -0.24
Traf1P39428 AC154257.1-202ENSMUST00000224729 843 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Gm5879-201ENSMUST00000089501 1209 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC13.56□□□□□ -0.24
Traf1P39428 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.56□□□□□ -0.24
Traf1P39428 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC13.56□□□□□ -0.24
Traf1P39428 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
Traf1P39428 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.56□□□□□ -0.24
Traf1P39428 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Traf1P39428 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Gm22711-201ENSMUST00000116890 133 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Gm15172-201ENSMUST00000118945 1046 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Gm14441-201ENSMUST00000121960 540 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13.55□□□□□ -0.24
Traf1P39428 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC13.55□□□□□ -0.24
Traf1P39428 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC13.55□□□□□ -0.24
Traf1P39428 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC13.55□□□□□ -0.24
Traf1P39428 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
Traf1P39428 Gm44545-201ENSMUST00000208262 746 ntBASIC13.55□□□□□ -0.24
Traf1P39428 AC112945.1-201ENSMUST00000226413 514 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Gm21998-201ENSMUST00000117552 1308 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Gm9387-201ENSMUST00000098624 1320 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Traf1P39428 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Traf1P39428 AC123738.2-201ENSMUST00000223791 1899 ntBASIC13.55□□□□□ -0.24
Traf1P39428 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms