Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Col18a1P39061 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.11■□□□□ 0.01
Col18a1P39061 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC15.11■□□□□ 0.01
Col18a1P39061 Prr13-205ENSMUST00000171245 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Mir7088-201ENSMUST00000184227 86 ntBASIC15.11■□□□□ 0.01
Col18a1P39061 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Galntl5-201ENSMUST00000030778 1627 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC15.1■□□□□ 0.01
Col18a1P39061 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC15.1■□□□□ 0.01
Col18a1P39061 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC15.1■□□□□ 0.01
Col18a1P39061 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Col18a1P39061 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col18a1P39061 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Tulp2-203ENSMUST00000107758 1597 ntTSL 5 BASIC15.1■□□□□ 0.01
Col18a1P39061 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.1■□□□□ 0.01
Col18a1P39061 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col18a1P39061 Gm15031-201ENSMUST00000121341 210 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC15.1■□□□□ 0.01
Col18a1P39061 Gm36980-201ENSMUST00000195643 622 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Gm42908-201ENSMUST00000197508 870 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Gm18124-201ENSMUST00000210695 706 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 AC102327.1-201ENSMUST00000226389 742 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Srp14-201ENSMUST00000009693 798 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Matn2-206ENSMUST00000228570 2798 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Gm44153-201ENSMUST00000204162 1580 ntBASIC15.1■□□□□ 0.01
Col18a1P39061 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col18a1P39061 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm13135-201ENSMUST00000117628 3121 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Gm38385-201ENSMUST00000194454 2351 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm23062-201ENSMUST00000102349 110 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Gm15831-201ENSMUST00000156195 516 ntTSL 2 BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm27675-201ENSMUST00000184527 94 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Gm42859-201ENSMUST00000199572 193 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm18862-201ENSMUST00000204643 933 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Hesx1-202ENSMUST00000224331 983 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm23458-201ENSMUST00000083257 169 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Col18a1P39061 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 AC116503.1-201ENSMUST00000215445 2192 ntBASIC15.09■□□□□ 0.01
Col18a1P39061 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC15.09■□□□□ 0.01
Col18a1P39061 Gm30504-201ENSMUST00000209316 1688 ntTSL 5 BASIC15.09■□□□□ 0.01
Col18a1P39061 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col18a1P39061 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Fam220-ps-201ENSMUST00000116535 783 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Gm14817-201ENSMUST00000148522 643 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC15.08■□□□□ 0.01
Col18a1P39061 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC15.08■□□□□ 0.01
Col18a1P39061 Mir3091-201ENSMUST00000175086 76 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Platr10-202ENSMUST00000191479 818 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Gm5311-201ENSMUST00000203518 709 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Col18a1P39061 AC124687.5-201ENSMUST00000222734 596 ntTSL 5 BASIC15.08■□□□□ 0.01
Col18a1P39061 AC134860.2-201ENSMUST00000225277 1036 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Gm5292-201ENSMUST00000073317 580 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms